FastQC Summary

Read Totals

Library Sizes ranged between 30,626,169 and 37,740,925 reads.

Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.

FastQC Summary

Summary of FastQC flags for each parameter

Per Base Sequence Quality

Heatmap showing mean base qualities for each library

Per Sequence Quality Scores

Heatmap showing mean sequence qualities for each library

Per Base Sequence Content

Heatmap of summed base distributions along each read

Per Sequence GC Content

GC Content Heatmap normalised to theoretical GC content in the Drerio Transcriptome

GC Content Distributions for all reads showing theoretical GC content from the Drerio Transcriptome

Sequence Length Distribution

Sequence Duplication Levels

Adapter Content

Universal Adapter Content

Overrepresented Summary

Total overrepresented sequences for each library

Overrepresented Sequences

## Overrepresented_sequences missing from SRR11951228.fastq.gz
## Overrepresented_sequences missing from SRR11951229.fastq.gz
## Overrepresented_sequences missing from SRR11951230.fastq.gz
## Overrepresented_sequences missing from SRR11951231.fastq.gz
## Overrepresented_sequences missing from SRR11951232.fastq.gz
## Overrepresented_sequences missing from SRR11951233.fastq.gz
## Overrepresented_sequences missing from SRR11951234.fastq.gz
## Overrepresented_sequences missing from SRR11951235.fastq.gz
## Overrepresented_sequences missing from SRR11951236.fastq.gz
## Overrepresented_sequences missing from SRR11951237.fastq.gz
## Overrepresented_sequences missing from SRR11951238.fastq.gz
## Overrepresented_sequences missing from SRR11951239.fastq.gz
## Overrepresented_sequences missing from SRR11951240.fastq.gz
## Overrepresented_sequences missing from SRR11951241.fastq.gz
## Overrepresented_sequences missing from SRR11951242.fastq.gz
## Overrepresented_sequences missing from SRR11951243.fastq.gz
## Overrepresented_sequences missing from SRR11951244.fastq.gz
## Overrepresented_sequences missing from SRR11951245.fastq.gz
## Overrepresented_sequences missing from SRR11951246.fastq.gz
## Overrepresented_sequences missing from SRR11951247.fastq.gz
## Overrepresented_sequences missing from SRR11951248.fastq.gz
## Overrepresented_sequences missing from SRR11951249.fastq.gz
## Overrepresented_sequences missing from SRR11951250.fastq.gz
## Overrepresented_sequences missing from SRR11951251.fastq.gz
## No overrepresented sequences were detected by FastQC

Session Information

R version 4.0.3 (2020-10-10)

Platform: x86_64-pc-linux-gnu (64-bit)

locale: LC_CTYPE=en_AU.UTF-8, LC_NUMERIC=C, LC_TIME=en_AU.UTF-8, LC_COLLATE=en_AU.UTF-8, LC_MONETARY=en_AU.UTF-8, LC_MESSAGES=en_AU.UTF-8, LC_PAPER=en_AU.UTF-8, LC_NAME=C, LC_ADDRESS=C, LC_TELEPHONE=C, LC_MEASUREMENT=en_AU.UTF-8 and LC_IDENTIFICATION=C

attached base packages: parallel, stats, graphics, grDevices, utils, datasets, methods and base

other attached packages: pander(v.0.6.3), DT(v.0.14), scales(v.1.1.1), readr(v.1.3.1), dplyr(v.1.0.0), stringr(v.1.4.0), magrittr(v.1.5), ngsReports(v.1.4.2), tibble(v.3.0.3), ggplot2(v.3.3.2) and BiocGenerics(v.0.34.0)

loaded via a namespace (and not attached): Biobase(v.2.48.0), ggdendro(v.0.1.22), httr(v.1.4.1), tidyr(v.1.1.0), jsonlite(v.1.7.0), viridisLite(v.0.3.0), stats4(v.4.0.3), latticeExtra(v.0.6-29), GenomeInfoDbData(v.1.2.3), Rsamtools(v.2.4.0), yaml(v.2.2.1), ggrepel(v.0.8.2), pillar(v.1.4.6), lattice(v.0.20-41), glue(v.1.4.1), digest(v.0.6.25), GenomicRanges(v.1.40.0), RColorBrewer(v.1.1-2), XVector(v.0.28.0), colorspace(v.1.4-1), htmltools(v.0.5.0), Matrix(v.1.2-18), plyr(v.1.8.6), FactoMineR(v.2.3), pkgconfig(v.2.0.3), ShortRead(v.1.46.0), zlibbioc(v.1.34.0), purrr(v.0.3.4), jpeg(v.0.1-8.1), BiocParallel(v.1.22.0), farver(v.2.0.3), generics(v.0.0.2), IRanges(v.2.22.2), ellipsis(v.0.3.1), withr(v.2.2.0), SummarizedExperiment(v.1.18.2), lazyeval(v.0.2.2), crayon(v.1.3.4), evaluate(v.0.14), MASS(v.7.3-53), forcats(v.0.5.0), hwriter(v.1.3.2), truncnorm(v.1.0-8), Cairo(v.1.5-12.2), tools(v.4.0.3), data.table(v.1.12.8), hms(v.0.5.3), lifecycle(v.0.2.0), matrixStats(v.0.56.0), plotly(v.4.9.2.1), S4Vectors(v.0.26.1), munsell(v.0.5.0), cluster(v.2.1.0), DelayedArray(v.0.14.1), packrat(v.0.5.0), Biostrings(v.2.56.0), flashClust(v.1.01-2), compiler(v.4.0.3), GenomeInfoDb(v.1.24.2), rlang(v.0.4.7), grid(v.4.0.3), RCurl(v.1.98-1.2), rstudioapi(v.0.11), htmlwidgets(v.1.5.1), crosstalk(v.1.1.0.1), leaps(v.3.1), labeling(v.0.3), bitops(v.1.0-6), rmarkdown(v.2.3), gtable(v.0.3.0), reshape2(v.1.4.4), R6(v.2.4.1), GenomicAlignments(v.1.24.0), zoo(v.1.8-8), lubridate(v.1.7.9), knitr(v.1.29), stringi(v.1.4.6), Rcpp(v.1.0.5), vctrs(v.0.3.2), png(v.0.1-7), scatterplot3d(v.0.3-41), tidyselect(v.1.1.0) and xfun(v.0.15)