Library Sizes ranged between 30,626,169 and 37,740,925 reads.
Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.
Summary of FastQC flags for each parameter
Heatmap showing mean base qualities for each library
Heatmap showing mean sequence qualities for each library
Heatmap of summed base distributions along each read
GC Content Heatmap normalised to theoretical GC content in the Drerio Transcriptome
GC Content Distributions for all reads showing theoretical GC content from the Drerio Transcriptome
Universal Adapter Content
Total overrepresented sequences for each library
## Overrepresented_sequences missing from SRR11951228.fastq.gz## Overrepresented_sequences missing from SRR11951229.fastq.gz## Overrepresented_sequences missing from SRR11951230.fastq.gz## Overrepresented_sequences missing from SRR11951231.fastq.gz## Overrepresented_sequences missing from SRR11951232.fastq.gz## Overrepresented_sequences missing from SRR11951233.fastq.gz## Overrepresented_sequences missing from SRR11951234.fastq.gz## Overrepresented_sequences missing from SRR11951235.fastq.gz## Overrepresented_sequences missing from SRR11951236.fastq.gz## Overrepresented_sequences missing from SRR11951237.fastq.gz## Overrepresented_sequences missing from SRR11951238.fastq.gz## Overrepresented_sequences missing from SRR11951239.fastq.gz## Overrepresented_sequences missing from SRR11951240.fastq.gz## Overrepresented_sequences missing from SRR11951241.fastq.gz## Overrepresented_sequences missing from SRR11951242.fastq.gz## Overrepresented_sequences missing from SRR11951243.fastq.gz## Overrepresented_sequences missing from SRR11951244.fastq.gz## Overrepresented_sequences missing from SRR11951245.fastq.gz## Overrepresented_sequences missing from SRR11951246.fastq.gz## Overrepresented_sequences missing from SRR11951247.fastq.gz## Overrepresented_sequences missing from SRR11951248.fastq.gz## Overrepresented_sequences missing from SRR11951249.fastq.gz## Overrepresented_sequences missing from SRR11951250.fastq.gz## Overrepresented_sequences missing from SRR11951251.fastq.gz## No overrepresented sequences were detected by FastQCR version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
locale: LC_CTYPE=en_AU.UTF-8, LC_NUMERIC=C, LC_TIME=en_AU.UTF-8, LC_COLLATE=en_AU.UTF-8, LC_MONETARY=en_AU.UTF-8, LC_MESSAGES=en_AU.UTF-8, LC_PAPER=en_AU.UTF-8, LC_NAME=C, LC_ADDRESS=C, LC_TELEPHONE=C, LC_MEASUREMENT=en_AU.UTF-8 and LC_IDENTIFICATION=C
attached base packages: parallel, stats, graphics, grDevices, utils, datasets, methods and base
other attached packages: pander(v.0.6.3), DT(v.0.14), scales(v.1.1.1), readr(v.1.3.1), dplyr(v.1.0.0), stringr(v.1.4.0), magrittr(v.1.5), ngsReports(v.1.4.2), tibble(v.3.0.3), ggplot2(v.3.3.2) and BiocGenerics(v.0.34.0)
loaded via a namespace (and not attached): Biobase(v.2.48.0), ggdendro(v.0.1.22), httr(v.1.4.1), tidyr(v.1.1.0), jsonlite(v.1.7.0), viridisLite(v.0.3.0), stats4(v.4.0.3), latticeExtra(v.0.6-29), GenomeInfoDbData(v.1.2.3), Rsamtools(v.2.4.0), yaml(v.2.2.1), ggrepel(v.0.8.2), pillar(v.1.4.6), lattice(v.0.20-41), glue(v.1.4.1), digest(v.0.6.25), GenomicRanges(v.1.40.0), RColorBrewer(v.1.1-2), XVector(v.0.28.0), colorspace(v.1.4-1), htmltools(v.0.5.0), Matrix(v.1.2-18), plyr(v.1.8.6), FactoMineR(v.2.3), pkgconfig(v.2.0.3), ShortRead(v.1.46.0), zlibbioc(v.1.34.0), purrr(v.0.3.4), jpeg(v.0.1-8.1), BiocParallel(v.1.22.0), farver(v.2.0.3), generics(v.0.0.2), IRanges(v.2.22.2), ellipsis(v.0.3.1), withr(v.2.2.0), SummarizedExperiment(v.1.18.2), lazyeval(v.0.2.2), crayon(v.1.3.4), evaluate(v.0.14), MASS(v.7.3-53), forcats(v.0.5.0), hwriter(v.1.3.2), truncnorm(v.1.0-8), Cairo(v.1.5-12.2), tools(v.4.0.3), data.table(v.1.12.8), hms(v.0.5.3), lifecycle(v.0.2.0), matrixStats(v.0.56.0), plotly(v.4.9.2.1), S4Vectors(v.0.26.1), munsell(v.0.5.0), cluster(v.2.1.0), DelayedArray(v.0.14.1), packrat(v.0.5.0), Biostrings(v.2.56.0), flashClust(v.1.01-2), compiler(v.4.0.3), GenomeInfoDb(v.1.24.2), rlang(v.0.4.7), grid(v.4.0.3), RCurl(v.1.98-1.2), rstudioapi(v.0.11), htmlwidgets(v.1.5.1), crosstalk(v.1.1.0.1), leaps(v.3.1), labeling(v.0.3), bitops(v.1.0-6), rmarkdown(v.2.3), gtable(v.0.3.0), reshape2(v.1.4.4), R6(v.2.4.1), GenomicAlignments(v.1.24.0), zoo(v.1.8-8), lubridate(v.1.7.9), knitr(v.1.29), stringi(v.1.4.6), Rcpp(v.1.0.5), vctrs(v.0.3.2), png(v.0.1-7), scatterplot3d(v.0.3-41), tidyselect(v.1.1.0) and xfun(v.0.15)